GLOBAL JOURNAL OF EARTH AND ENVIRONMENTAL SCIENCE
Integrity Research Journals

ISSN: 2636-6002
Model: Open Access/Peer Reviewed
DOI: 10.31248/GJEES
Start Year: 2016
Email: gjees@integrityresjournals.org


Phylogenetic relationship of hydrocarbon degrading fungi species in bioremediation

https://doi.org/10.31248/GJEES2017.013   |   Article Number: 23CBC8111   |   Vol.3 (2) - June 2018

Received Date: 11 December 2017   |   Accepted Date: 29 January 2018  |   Published Date: 30 June 2018

Authors:  Agbor R. B.* , Ekpo I. A. and Antai S. P.

Keywords: fungi, Bioremediation, hydrocarbon, phylogenetic, pollution.

The study focussed on the phylogenetic relationship of hydrocarbon degrading fungi species in bioremediation. Hydrocarbon degrading fungi species were isolated from soil polluted with crude oil and treated with varying concentrations of agro-wastes. DNA sequencing was done on the consortia of fungi isolated. The evolutionary history was inferred by using the Maximum likelihood method based on the Tamura-Nei model. Initial tree(s) for the heuristic search were obtained automatically as follows. When the number of common sites was < 100 or less than one fourth of the total number of sites, the maximum parsimony method was used; otherwise BIONJ method with MCL distance matrix was used. The tree was drawn to scale, with branch lengths measured in the number of substitutions per site. The phylogenetic relationship between the fungal species revealed that the organisms were grouped into two clusters, cluster 1 consist of Aspergillus oryzae, Aspergillus flavus, Talaromyces solicola, Penicillium purpurogenum, Penicillium citrium and Penicillium daleae while cluster 2 consist of Cunninghamella polymorpha and Cunninghamella bertholletiae. The results revealed that Aspergillus oryzae differs from Aspergillus flavus, while other organisms had high relationship with each other. The Cunninghamella polymorpha and Cunninghamella bertholletiae were highly related. The sequencing and phylogenetic of the fungi species revealed the specific identity of the organism and showed the similarity between the identified species.

Adebusoye, S. A., Ilori, M. O., Amund, O. O., Teniola, O. D., & Olatope, S. O. (2006). Microbial degradation of petroleum hydrocarbons in a polluted tropical stream. Journal of American Science, 2(3),48-56.
 
Adekunle, A. A., & Oluyode, T. F. (2002). Biodegradation of Crude Petroleum and Petroleum Products by fungi isolated from two oil seeds (Melon and soybean seeds). Journal of Environmental Biology, 26(1), 37-42.
 
Amund, O. O., & Nwokoye, N. (1993). Hydrocarbon potentials of yeast isolates from a polluted lagoon. Journal of Scientific Research and Development, 1, 65-68.
 
Atlas, R. M. (1981). Microbial degradation of petroleum hydrocarbons: An environmental perspective. Microbiology Revision, 4511, 80-209.
 
Atlas, R. M., & Bartha, R. (1983). Biotechnology of petroleum pollutant. Microbial Ecology, 12,155-157.
 
Atlas, R. M., & Bartha, R. (1992). Hydrocarbon biodegradation and oil spill bioremediation. Advances in Microbial Ecology, 12, 278-338.
Crossref
 
Beaudin, N., Carol, R. F., Legros, R., Ramsay, J., & Ramsay, B. (1999). Identification of the key factors affecting composting of a weathered hydrocarbon-contaminated soil. Biodegradation. 10, 127-133.
Crossref
 
Betts, W. B. (1998). Bioremediation - An alternative treatment for oil pollution. Genetic Engineering and Biotechnology, 13(1), 45-59.
 
El-shafie, A., AlKindi, A. Y., Al-Busaidi, S., Bakheit, C., & Albahry, S. N. (2007). Biodegradation of crude oil and n-alkanes by fungi isolated from Oman. March Pollution Bulleting 54(11), 1692-1696.
Crossref
 
Favela-Torres, E., Volke-Sepúlveda, T., & Viniegra-González, G. (2006). Production of hydrolytic depolymerising pectinases. Food Technology and Biotechnology, 44, 221-227.
 
Gersinde, A. F., Agbo, E. B., Agho, M. O., & Dike, E. F. C. (2008). Bioremediation of Some Nigerian and Arabian Crude Oils by Fungal Isolates. International Journal of Pure and Applied Sciences, 2(3), 37-44.
 
Head, M., & Swannell, R. P. (1999). Bioremediation of petroleum hydrocarbon contaminants in marine habitats. Current Opinion in Biotechnology. 16, 234-239.
Crossref
 
Jones, D. M., Douglas, A. G., Parkes, R. J., Taylor, J., Giger, W., & Schaffner, G. (1983). The recognition of biodegraded petroleum- derived aromatic hydrocarbons in recent marine sediments. Marine Pollution Bulletin, 14, 103-108.
Crossref
 
Jonge, D. H., Freijier, J. I., Verstraten, J. M., Westerveld, J., & Vanderwielen, F. W. M. (1997). Relation between bioavailability and fuel oil hydrocarbon composition in contaminated soils. Environmental Science and Technology, 31, 771-775.
Crossref
 
Kurtzman, C. P., Horn, B. W., & Hesseltine, C. W. (1987). Aspergillus nomius, a new aflatoxin-producing species related to Aspergillus flavus and Aspergillus tamarii. Antonie van Leeuwenhoek. Microbiology Serology, 53, 147-158.
 
Leahy, J. C., & Colwell, R. R. (1990). Microbial degradation of hydrocarbons in the environment. Microbiology Reviews, 54, 305-315.
 
Metzenberg, R. L. (2003). Vogel's Medium N salts: Avoiding the need for ammonium nitrate: Fungal Genetics. Newsletter, 50, 14.
Crossref
 
Michel, F. C., Reddy, A., & Forney, I. J. (1993). Yard waste compositing: studies using different mixes of leaves and grass in a laboratory scale system. Compost Science Utilization International, 7(5), 933-941.
 
Mohanty, G., & Mukherji, D. (2008). Biodegradation rate of diesel range n-alkanes by bacterial cultures Exiguobacterium aurantiacum and Burkholderia cepacia. International Biodeterioration and Biodegradation, 61, 240-250.
Crossref
 
Namkoong, W., Hwang, E. Y., Park, J. S., & Choi, J. Y. (2002). Bioremediation of diesel contaminated soil with composting. Environmental Pollution, 119, 23-31.
Crossref
 
Obire, O., & Okudo, I. (1997). Effects of crude oil on a freshwater stream in Nigeria. Discovery and Innovation, 9: 25-32.
 
Seklemova, E., Pavlova, A., & Kovacheva, K. (2001). Biostimulation–based bioremediation of diesel fuel. Field Demonstration of Biodegradation, 12, 311-31.
Crossref
 
Song, H. G & Bartha, R. (1990). Effects of jet fuel potential on the microbial community of soil. Applied and Environmental Microbiology, 56, 646-651.
 
Supaphol, S., Panichsakpatana, S., Trakulnaleamsai, S., Tungkananuruk, N., & Roughjanajirapa, P. (2006). The selection of mixed microbial inocula in environmental biotechnology: Example using petroleum-contaminated tropical soils. Journal of Microbial Methods, 65, 432-441.
Crossref